Episode 01:
Taiyou ni Idomusha (To Challenge the Sun)

Episode 02:
Kinki no Karada ( Body of Taboo)

Episode 03:
Okaa-san...... (Mother)

Episode 04:
Ai no Rensei (Transmutation of Love)

Episode 05:
Shissou AUTO-MAIL (Dash! Auto-Mail)

Episode 06:
Kokka Renkinjutsushi Shikaku Shiken (National Alchemist Qualification Test)

Episode 07:
Kimera ga Naku Yoru (The Night of the Chimera's Cry)

Episode 08:
Kensha no Ishi (Philosopher's Stone)

Episode 09:
Bun no Inu no Gintokei (Silver Watch of the Dog of the Military)

Episode 10:
Kaitou SAIREEN (Thief Siren)

Episode 11:
Sareki no Daichi, Zenhen (Plain of Pebbles, Part 1)

Episode 12:
Sareki no Daichi, Kouhen (Plain of Pebbles, Part 2)

Episode 13:
Flame vs. Fullmetal

Episode 14:
Hakai no Migite (The Right Hand of Destruction)

Episode 15:
Ishbal Massacre

Episode 16:
Ushinawareta mono (That Which is Lost)

Episode 17:
Kazoku no Matsu Ie (House of the Waiting Family)

Episode 18:
Marcoh's Notes

Episode 19:
Shinjitsu no oku no oku (The Genuine Truth Behind Truths)

Episode 20:
Shugosha no Tamashii (Soul of the Guardian)

Episode 21:
Akai Kagayaki (Crimson Glow)

Episode 22:
Tsukurareta Ningen (Created Human)

Episode 23:
Hagane No Kokoro (Fullmetal's Heart)

Episode 24:
Omoide no Teichaku (Bonding Memories)

Episode 25:
Wakare no Gishiki (Farewell Ceremony)

Episode 26:
Kanojyo no Riyuu (Her Reason)

Episode 27:
Sensei (Teacher)

Episode 28:
Ichi wa Zen, Zen wa Ichi (One is All, All is One)

Episode 29:
Kegarenaki Kodomo (Untainted Child)

Episode 30:
Nanpou Shireibu Shuugeki (South Headquarters Assault)

Episode 31:
Tsumi (Sin)

Episode 32:
Fukai Mori no DANTE (Dante of the Deep Forest)

Episode 33:
Sarawareta Al (Kidnapped Al)

Episode 34:
Gouyoku no Riron (The Theory of Greed)

Episode 35:
Gusha no Saikai (The Reunion of Fools)

Episode 36:
Wa ga Uchi Naru Togabito (The Sinner Within Me)

Episode 37:
Hoono no Renkinjutsushi Tatakau Shouyi san Dai Jyuusan Souko no Kai
(Flame Alchemist, Fighting Lieutenant, Mystery of the Thirteenth Warehouse)

Episode 38:
Kawa no Nagare ni (With the River's Flow)

Episode 39:
Touhou Naisen (Eastern Civil War)

Episode 40:
Kizu Ato (The Scar)

Episode 41:
Seibo (Holy Mother)

Episode 42:
Kare no Na o Shirazu (I Know His Name)

Episode 43:
Norainu wa Negedashita (The Stray Dog Has Ran Away)

Episode 44:
Hikari no Hohenheim (Hohemheim of Light)

Episode 45:
Kokoro o Rikkasaseru Mono (The One Who Lets Her Heart Rot)

Episode 46:
Jintai Rensei (Human Transmutation)

Episode 47:
HOMUNKURUSU Fuuyin (Sealing the Homunculus)

Episode 48:
Sayounara (Good bye)

Episode 49:
Tobira no mukou e (Beyond the Gate)

Episode 50:
Shi (Death)

Episode 51:
Munich 1921